miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167428651|gb|FD936648.1|FD936648 TTTTTTTTTTTTTTTTTTTGGAAACAACCAACAAGAAGCATAAATAAACAAAAGCCAATGTATGGAAACAATTTTTTTGG
TTCATGAGTAAAGCAAATAACAGAAAAAAAAAAGAGAAATATAACAAGAATATGATTGTCTGATGCAAAGAGACTCAGAA
AGACCAGTTGTGATGGTGTGAAGAAGAGTCATAAGCCCTTGAGTTCTCACCTTCCATGTACTGCCTCCTATTCTGATGTT
GATGGTCAGATAACTCGAACTCACCCATTGTCGTTCCACCGCCCATCTCTGTCTCGGTGAATCGCCCCAAATTCAAAACA
GGAGACATATCATTCTGACAGTTATTGTCATCGTCCTTAAACACCCAAGGCGGGTTCAGATACTGATGCTGGCTAGGTGC
AGGTGGTGGCTGAACCATTGTAACCGTCATCGGACCAAAACCTGAAGAAGTTCTCCATGTGTTGTTGTCGTTGGTGTTGT
CATGTGGCTGGTGTGGGTTTGACAGAAGAGAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTA
GTGTCCATAACCTCTGGAGATGAGAAGCTTATCCCTCCTCCTCCTCCTCCACTGACTGATCCTTGACTAAACACGTTCAT
CGGATTGATCTGCCACGACGGTCGTCTCATCACTCTTG




Most similar to sp|Q700W2|SPL9_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9
           OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2
          Length = 375

 Score =  225 bits (573), Expect = 2e-58
 Identities = 123/187 (65%), Positives = 128/187 (68%), Gaps = 15/187 (8%)
 Frame = -3

Query: 676 RVMRRP----SWQINPMNVFXXXXXXXXXXXXXXXXSPEVMDTKPESYKGIGSDSNCALS 509
           RVMRRP    SWQINPMNVF                 PE+MDTK ESYKGIG DSNCALS
Sbjct: 196 RVMRRPVSSPSWQINPMNVFSQGSVGGGGTSFSS---PEIMDTKLESYKGIG-DSNCALS 251

Query: 508 LLSNPHQPHDNTNDNN--------TWRTSSGFGPMTVTMVQPPPAPSQHQYLNPPWVFKD 353
           LLSNPHQPHDN N+NN        TWR SSGFGPMTVTM QPPPAPSQHQYLNPPWVFKD
Sbjct: 252 LLSNPHQPHDNNNNNNNNNNNNNNTWRASSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKD 311

Query: 352 DDNNCQNDMSPVLNLGR---XXXXXXXXXXXXXXXELSDHQHQNRRQYMEGENSRAYDSS 182
           +D    NDMSPVLNLGR                  ELSDH HQ+RRQYME EN+RAYDSS
Sbjct: 312 ND----NDMSPVLNLGRYTEPDNCQISSGTAMGEFELSDHHHQSRRQYMEDENTRAYDSS 367

Query: 181 SHHHNWS 161
           SHH NWS
Sbjct: 368 SHHTNWS 374